IL_6Z6J_151

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6Z6J|1|C2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_151 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.1811

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6Z6J|1|C2|G|204
6Z6J|1|C2|U|205
6Z6J|1|C2|A|206
*
6Z6J|1|C2|U|259
6Z6J|1|C2|U|260
6Z6J|1|C2|U|261
6Z6J|1|C2|U|262
6Z6J|1|C2|C|263

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SI

40S ribosomal protein S8-A