IL_6Z6J_157
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_157 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.202
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59877.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Z6J|1|C2|U|318
6Z6J|1|C2|U|319
6Z6J|1|C2|U|320
6Z6J|1|C2|C|321
6Z6J|1|C2|G|322
6Z6J|1|C2|A|323
*
6Z6J|1|C2|U|345
6Z6J|1|C2|G|346
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- 60S ribosomal protein L19-A
- Chain SI
- 40S ribosomal protein S8-A
- Chain SL
- 40S ribosomal protein S11-A
Coloring options: