IL_6Z6J_169

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6Z6J|1|C2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_169 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.2741

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6Z6J|1|C2|G|557
6Z6J|1|C2|U|558
6Z6J|1|C2|C|559
*
6Z6J|1|C2|G|586
6Z6J|1|C2|C|587

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain Se

40S ribosomal protein S30-A