IL_6Z6J_179

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_179 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1024

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6Z6J|1|C2|A|865
6Z6J|1|C2|G|866
*
6Z6J|1|C2|C|962
6Z6J|1|C2|A|963
6Z6J|1|C2|U|964
6Z6J|1|C2|U|965

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S22-A

Chain Sb

40S ribosomal protein S27-A