IL_6Z6J_180

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6Z6J|1|C2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_180 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2388

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6Z6J|1|C2|G|868
6Z6J|1|C2|A|869
6Z6J|1|C2|C|870
*
6Z6J|1|C2|G|957
6Z6J|1|C2|U|958
6Z6J|1|C2|U|959
6Z6J|1|C2|U|960

Current chains

Chain C2

18S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27-A