IL_6Z6J_198

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUCC*GUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6J|1|C2|G|1212
6Z6J|1|C2|G|1213
6Z6J|1|C2|U|1214
6Z6J|1|C2|C|1215
6Z6J|1|C2|C|1216
*
6Z6J|1|C2|G|1448
6Z6J|1|C2|U|1449
6Z6J|1|C2|U|1450
6Z6J|1|C2|C|1451

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10-A

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29-A