IL_6Z6J_207
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 6Z6J|1|C2|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_207 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.2181
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6Z6J|1|C2|C|1339
6Z6J|1|C2|U|1340
6Z6J|1|C2|A|1341
6Z6J|1|C2|C|1342
*
6Z6J|1|C2|G|1383
6Z6J|1|C2|A|1384
6Z6J|1|C2|G|1385
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sg
- Guanine nucleotide-binding protein subunit beta-like protein
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