IL_6Z6J_209

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

6Z6J|1|C2|U|1370, 6Z6J|1|C2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6J_209 not in the Motif Atlas

Homologous match to IL_8P9A_446

Geometric discrepancy: 0.3732

The information below is about IL_8P9A_446

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6J|1|C2|G|1352
6Z6J|1|C2|U|1353
6Z6J|1|C2|G|1354
6Z6J|1|C2|C|1355
*
6Z6J|1|C2|G|1368
6Z6J|1|C2|U|1369
6Z6J|1|C2|U|1370
6Z6J|1|C2|A|1371
6Z6J|1|C2|U|1372
6Z6J|1|C2|C|1373

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16-A

Chain ST

40S ribosomal protein S19-A

Chain SU

40S ribosomal protein S20