IL_6Z6J_214
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_214 not in the Motif Atlas
- Homologous match to IL_4V88_462
- Geometric discrepancy: 0.1819
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Z6J|1|C2|G|1540
6Z6J|1|C2|G|1541
6Z6J|1|C2|G|1542
6Z6J|1|C2|A|1543
6Z6J|1|C2|U|1544
6Z6J|1|C2|A|1545
*
6Z6J|1|C2|U|1566
6Z6J|1|C2|U|1567
6Z6J|1|C2|C|1568
6Z6J|1|C2|A|1569
6Z6J|1|C2|A|1570
6Z6J|1|C2|C|1571
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SS
- 40S ribosomal protein S18-A
- Chain ST
- 40S ribosomal protein S19-A
Coloring options: