3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
6Z6J|1|C1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6J_240 not in the Motif Atlas
Homologous match to IL_8C3A_484
Geometric discrepancy: 0.1082
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

6Z6J|1|C1|G|1898
6Z6J|1|C1|G|1899
6Z6J|1|C1|A|1900
6Z6J|1|C1|A|1901
6Z6J|1|C1|G|1902
6Z6J|1|C1|U|1903
6Z6J|1|C1|C|1904
6Z6J|1|C1|G|1905
6Z6J|1|C1|G|1906
*
6Z6J|1|C1|C|2333
6Z6J|1|C1|U|2334
6Z6J|1|C1|G|2335
6Z6J|1|C1|U|2336
6Z6J|1|C1|C|2337

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2462 s