IL_6Z6J_246
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6J_246 not in the Motif Atlas
- Homologous match to IL_8CRE_428
- Geometric discrepancy: 0.1452
- The information below is about IL_8CRE_428
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6Z6J|1|C2|A|746
6Z6J|1|C2|C|747
*
6Z6J|1|C2|G|802
6Z6J|1|C2|A|803
6Z6J|1|C2|A|804
6Z6J|1|C2|U|805
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7-A
- Chain SL
- 40S ribosomal protein S11-A
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
Coloring options: