IL_6Z6K_012

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

6Z6K|1|C1|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_012 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1137

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6Z6K|1|C1|G|189
6Z6K|1|C1|U|190
6Z6K|1|C1|U|191
*
6Z6K|1|C1|A|204
6Z6K|1|C1|C|205

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A