IL_6Z6K_026

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1785

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Z6K|1|C1|C|758
6Z6K|1|C1|U|759
6Z6K|1|C1|G|760
6Z6K|1|C1|A|761
6Z6K|1|C1|U|762
6Z6K|1|C1|G|763
*
6Z6K|1|C1|C|768
6Z6K|1|C1|G|769
6Z6K|1|C1|G|770
6Z6K|1|C1|A|771
6Z6K|1|C1|U|772
6Z6K|1|C1|G|773

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain La

60S ribosomal protein L28

Chain Lo

60S ribosomal protein L42-A