IL_6Z6K_029

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6Z6K|1|C1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_029 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1272

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6Z6K|1|C1|A|828
6Z6K|1|C1|U|829
*
6Z6K|1|C1|A|895
6Z6K|1|C1|A|896
6Z6K|1|C1|U|897

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain Lg

60S ribosomal protein L34-A