IL_6Z6K_037

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_037 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.551

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6Z6K|1|C1|C|977
6Z6K|1|C1|G|978
6Z6K|1|C1|U|979
6Z6K|1|C1|A|980
6Z6K|1|C1|U|981
*
6Z6K|1|C1|A|1102
6Z6K|1|C1|A|1103
6Z6K|1|C1|G|1104

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7-A

Chain LQ

60S ribosomal protein L18-A

Chain Lb

60S ribosomal protein L29