IL_6Z6K_042
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6K_042 not in the Motif Atlas
- Homologous match to IL_5TBW_041
- Geometric discrepancy: 0.1439
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Z6K|1|C1|A|1006
6Z6K|1|C1|U|1007
6Z6K|1|C1|U|1008
6Z6K|1|C1|A|1009
*
6Z6K|1|C1|U|1041
6Z6K|1|C1|U|1042
6Z6K|1|C1|C|1043
6Z6K|1|C1|U|1044
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C5
- Protein LSO2
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10
Coloring options: