IL_6Z6K_044

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|U|1015, 6Z6K|1|C1|C|1016, 6Z6K|1|C1|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_044 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3949

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6Z6K|1|C1|U|1014
6Z6K|1|C1|U|1015
6Z6K|1|C1|C|1016
6Z6K|1|C1|C|1017
6Z6K|1|C1|G|1018
*
6Z6K|1|C1|U|1034
6Z6K|1|C1|G|1035
6Z6K|1|C1|A|1036

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C5

Protein LSO2

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11-A