IL_6Z6K_046

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6Z6K|1|C1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_046 not in the Motif Atlas

Geometric match to IL_5TBW_045

Geometric discrepancy: 0.1203

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6Z6K|1|C1|U|1074
6Z6K|1|C1|A|1075
6Z6K|1|C1|C|1076
*
6Z6K|1|C1|G|1083
6Z6K|1|C1|A|1084

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29