3D structure

PDB id
6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6K_098 not in the Motif Atlas
Homologous match to IL_5TBW_098
Geometric discrepancy: 0.0786
The information below is about IL_5TBW_098
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6Z6K|1|C1|G|2614
6Z6K|1|C1|G|2615
*
6Z6K|1|C1|C|2625
6Z6K|1|C1|A|2626
6Z6K|1|C1|C|2627

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LI
60S ribosomal protein L10
Chain LT
60S ribosomal protein L21-A
Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L42-A

Coloring options:


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