IL_6Z6K_206

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_206 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.1544

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6Z6K|1|C2|C|1306
6Z6K|1|C2|U|1307
6Z6K|1|C2|G|1308
*
6Z6K|1|C2|C|1317
6Z6K|1|C2|G|1318

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-A

Chain Sa

40S ribosomal protein S26-B