IL_6Z6K_214

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_214 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1514

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6Z6K|1|C2|G|1540
6Z6K|1|C2|G|1541
6Z6K|1|C2|G|1542
6Z6K|1|C2|A|1543
6Z6K|1|C2|U|1544
6Z6K|1|C2|A|1545
*
6Z6K|1|C2|U|1566
6Z6K|1|C2|U|1567
6Z6K|1|C2|C|1568
6Z6K|1|C2|A|1569
6Z6K|1|C2|A|1570
6Z6K|1|C2|C|1571

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18-A

Chain ST

40S ribosomal protein S19-A