IL_6Z6K_217

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_217 not in the Motif Atlas

Geometric match to IL_5MWI_007

Geometric discrepancy: 0.1628

The information below is about IL_5MWI_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6Z6K|1|C2|G|1642
6Z6K|1|C2|U|1643
6Z6K|1|C2|C|1644
*
6Z6K|1|C2|G|1757
6Z6K|1|C2|U|1758
6Z6K|1|C2|C|1759

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain C5

Protein LSO2

Chain Ln

60S ribosomal protein L41-A