IL_6Z6K_238

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6K_238 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1082

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6Z6K|1|C1|G|1898
6Z6K|1|C1|G|1899
6Z6K|1|C1|A|1900
6Z6K|1|C1|A|1901
6Z6K|1|C1|G|1902
6Z6K|1|C1|U|1903
6Z6K|1|C1|C|1904
6Z6K|1|C1|G|1905
6Z6K|1|C1|G|1906
*
6Z6K|1|C1|C|2333
6Z6K|1|C1|U|2334
6Z6K|1|C1|G|2335
6Z6K|1|C1|U|2336
6Z6K|1|C1|C|2337

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A