3D structure

PDB id
6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCCCGG*UC
Length
8 nucleotides
Bulged bases
6Z6L|1|L5|C|501, 6Z6L|1|L5|C|502, 6Z6L|1|L5|C|503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6L_029 not in the Motif Atlas
Geometric match to IL_1R3E_001
Geometric discrepancy: 0.3189
The information below is about IL_1R3E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_44609.1
Basepair signature
cWW-cWW
Number of instances in this motif group
28

Unit IDs

6Z6L|1|L5|G|500
6Z6L|1|L5|C|501
6Z6L|1|L5|C|502
6Z6L|1|L5|C|503
6Z6L|1|L5|G|504
6Z6L|1|L5|G|505
*
6Z6L|1|L5|U|653
6Z6L|1|L5|C|654

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a

Coloring options:


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