3D structure

PDB id
6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
6Z6L|1|L5|A|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Z6L_053 not in the Motif Atlas
Homologous match to IL_8C3A_026
Geometric discrepancy: 0.0761
The information below is about IL_8C3A_026
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6Z6L|1|L5|C|1467
6Z6L|1|L5|C|1468
*
6Z6L|1|L5|G|1496
6Z6L|1|L5|A|1497
6Z6L|1|L5|G|1498

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29

Coloring options:


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