IL_6Z6L_073

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_073 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3278

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

6Z6L|1|L5|G|1753
6Z6L|1|L5|U|1754
6Z6L|1|L5|C|1755
6Z6L|1|L5|U|1756
*
6Z6L|1|L5|A|1775
6Z6L|1|L5|A|1776
6Z6L|1|L5|C|1777

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like