IL_6Z6L_138

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_138 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1672

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6Z6L|1|L5|C|4412
6Z6L|1|L5|C|4413
6Z6L|1|L5|A|4414
6Z6L|1|L5|A|4415
6Z6L|1|L5|G|4416
*
6Z6L|1|L5|C|4426
6Z6L|1|L5|G|4427
6Z6L|1|L5|A|4428
6Z6L|1|L5|C|4429
6Z6L|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CE

Coiled-coil domain-containing protein 124

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40