IL_6Z6L_158

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

6Z6L|1|L5|C|4757, 6Z6L|1|L5|U|4758, 6Z6L|1|L5|A|4764, 6Z6L|1|L5|G|4870, 6Z6L|1|L5|C|4871, 6Z6L|1|L5|G|4873, 6Z6L|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6L|1|L5|C|4756
6Z6L|1|L5|C|4757
6Z6L|1|L5|U|4758
6Z6L|1|L5|C|4759
6Z6L|1|L5|G|4760
6Z6L|1|L5|G|4761
6Z6L|1|L5|A|4762
6Z6L|1|L5|U|4763
6Z6L|1|L5|A|4764
6Z6L|1|L5|G|4765
*
6Z6L|1|L5|U|4869
6Z6L|1|L5|G|4870
6Z6L|1|L5|C|4871
6Z6L|1|L5|G|4872
6Z6L|1|L5|G|4873
6Z6L|1|L5|A|4874
6Z6L|1|L5|G|4875
6Z6L|1|L5|U|4876
6Z6L|1|L5|G|4877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a