IL_6Z6L_163

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

6Z6L|1|L5|C|4900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_163 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.2578

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6Z6L|1|L5|G|4898
6Z6L|1|L5|G|4899
6Z6L|1|L5|C|4900
6Z6L|1|L5|G|4901
*
6Z6L|1|L5|C|4920
6Z6L|1|L5|C|4921
6Z6L|1|L5|C|4922

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14