IL_6Z6L_223

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6Z6L|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_223 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2705

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6Z6L|1|S2|G|925
6Z6L|1|S2|A|926
6Z6L|1|S2|C|927
*
6Z6L|1|S2|G|1014
6Z6L|1|S2|U|1015
6Z6L|1|S2|U|1016
6Z6L|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27