IL_6Z6L_278

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6L_278 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0792

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6Z6L|1|L5|G|2847
6Z6L|1|L5|G|2848
6Z6L|1|L5|A|2849
6Z6L|1|L5|A|2850
6Z6L|1|L5|G|2851
6Z6L|1|L5|U|2852
6Z6L|1|L5|C|2853
6Z6L|1|L5|G|2854
6Z6L|1|L5|G|2855
*
6Z6L|1|L5|C|3837
6Z6L|1|L5|U|3838
6Z6L|1|L5|G|3839
6Z6L|1|L5|U|3840
6Z6L|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23