IL_6Z6M_053

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_053 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1375

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6Z6M|1|L5|C|1431
6Z6M|1|L5|G|1432
6Z6M|1|L5|A|1433
6Z6M|1|L5|G|1434
*
6Z6M|1|L5|C|1450
6Z6M|1|L5|G|1451
6Z6M|1|L5|A|1452
6Z6M|1|L5|G|1453

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18