IL_6Z6M_086

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6Z6M|1|L5|G|1975, 6Z6M|1|L5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_086 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.382

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6Z6M|1|L5|G|1973
6Z6M|1|L5|U|1974
6Z6M|1|L5|G|1975
6Z6M|1|L5|G|1976
6Z6M|1|L5|C|1977
*
6Z6M|1|L5|G|1989
6Z6M|1|L5|A|1990
6Z6M|1|L5|A|1991
6Z6M|1|L5|U|1992
6Z6M|1|L5|C|1993

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like