IL_6Z6M_192

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

6Z6M|1|S2|C|139, 6Z6M|1|S2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|S2|G|130
6Z6M|1|S2|C|139
6Z6M|1|S2|C|140
6Z6M|1|S2|A|141
6Z6M|1|S2|C|142
6Z6M|1|S2|U|143
6Z6M|1|S2|U|144
*
6Z6M|1|S2|A|175
6Z6M|1|S2|U|176
6Z6M|1|S2|G|177
6Z6M|1|S2|C|178
6Z6M|1|S2|C|179
6Z6M|1|S2|G|180
6Z6M|1|S2|A|181
6Z6M|1|S2|C|182
*
6Z6M|1|S2|A|175
6Z6M|1|S2|U|176
6Z6M|1|S2|G|177
6Z6M|1|S2|C|178
6Z6M|1|S2|C|179
6Z6M|1|S2|G|180
6Z6M|1|S2|A|181
6Z6M|1|S2|C|182

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6