IL_6Z6M_227

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6Z6M|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_227 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2544

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6Z6M|1|S2|G|925
6Z6M|1|S2|A|926
*
6Z6M|1|S2|U|1015
6Z6M|1|S2|U|1016
6Z6M|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27