IL_6Z6M_243
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6M_243 not in the Motif Atlas
- Homologous match to IL_4V88_445
- Geometric discrepancy: 0.1118
- The information below is about IL_4V88_445
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
6Z6M|1|S2|G|1235
6Z6M|1|S2|G|1236
*
6Z6M|1|S2|C|1521
6Z6M|1|S2|A|1522
6Z6M|1|S2|C|1523
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain CD
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
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