IL_6Z6M_244
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6M_244 not in the Motif Atlas
- Homologous match to IL_4V88_446
- Geometric discrepancy: 0.207
- The information below is about IL_4V88_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6Z6M|1|S2|G|1270
6Z6M|1|S2|C|1271
6Z6M|1|S2|C|1272
*
6Z6M|1|S2|G|1510
6Z6M|1|S2|U|1511
6Z6M|1|S2|C|1512
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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