IL_6Z6M_268

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGAU*AUCUA

Length

11 nucleotides

Bulged bases

6Z6M|1|S2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6M|1|S2|U|1720
6Z6M|1|S2|U|1721
6Z6M|1|S2|G|1722
6Z6M|1|S2|G|1723
6Z6M|1|S2|A|1724
6Z6M|1|S2|U|1725
*
6Z6M|1|S2|A|1809
6Z6M|1|S2|U|1810
6Z6M|1|S2|C|1811
6Z6M|1|S2|U|1812
6Z6M|1|S2|A|1813

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23