IL_6Z6M_280

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

6Z6M|1|L5|C|1202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_280 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2288

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6Z6M|1|L5|C|1093
6Z6M|1|L5|G|1094
6Z6M|1|L5|A|1095
6Z6M|1|L5|C|1096
*
6Z6M|1|L5|G|1199
6Z6M|1|L5|G|1200
6Z6M|1|L5|U|1201
6Z6M|1|L5|C|1202
6Z6M|1|L5|G|1203

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21