IL_6Z6M_289

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACU*AGGC

Length

8 nucleotides

Bulged bases

6Z6M|1|S2|A|536

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6M_289 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3388

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6Z6M|1|S2|G|535
6Z6M|1|S2|A|536
6Z6M|1|S2|C|537
6Z6M|1|S2|U|538
*
6Z6M|1|S2|A|545
6Z6M|1|S2|G|546
6Z6M|1|S2|G|547
6Z6M|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30