IL_6Z6N_034

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

6Z6N|1|L5|A|932, 6Z6N|1|L5|C|934, 6Z6N|1|L5|A|935, 6Z6N|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|A|732
6Z6N|1|L5|A|733
6Z6N|1|L5|G|734
6Z6N|1|L5|G|735
*
6Z6N|1|L5|C|928
6Z6N|1|L5|A|929
6Z6N|1|L5|G|930
6Z6N|1|L5|C|931
6Z6N|1|L5|A|932
6Z6N|1|L5|G|933
6Z6N|1|L5|C|934
6Z6N|1|L5|A|935
6Z6N|1|L5|C|936
6Z6N|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a