IL_6Z6N_114

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

6Z6N|1|L5|G|2903, 6Z6N|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|G|2901
6Z6N|1|L5|G|2902
6Z6N|1|L5|G|2903
6Z6N|1|L5|U|2904
6Z6N|1|L5|C|2905
*
6Z6N|1|L5|G|3589
6Z6N|1|L5|G|3590
6Z6N|1|L5|C|3591
6Z6N|1|L5|G|3592
6Z6N|1|L5|C|3593
6Z6N|1|L5|C|3594
6Z6N|1|L5|U|3595
6Z6N|1|L5|A|3596
6Z6N|1|L5|G|3597
6Z6N|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11