IL_6Z6N_196

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Z6N_196 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2706

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6Z6N|1|S2|C|188
6Z6N|1|S2|U|189
6Z6N|1|S2|G|190
6Z6N|1|S2|A|191
6Z6N|1|S2|C|192
*
6Z6N|1|S2|G|207
6Z6N|1|S2|G|208
6Z6N|1|S2|A|209
6Z6N|1|S2|U|210
6Z6N|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8