IL_6Z6N_280

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUG*CUCACC

Length

43 nucleotides

Bulged bases

6Z6N|1|L5|A|1979, 6Z6N|1|L5|U|1980, 6Z6N|1|L5|G|1981, 6Z6N|1|L5|G|1982, 6Z6N|1|L5|A|1984, 6Z6N|1|L5|G|1988, 6Z6N|1|L5|G|1995, 6Z6N|1|L5|C|1996, 6Z6N|1|L5|U|1997

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6N|1|L5|G|1969
6Z6N|1|L5|A|1970
6Z6N|1|L5|C|1971
6Z6N|1|L5|G|1972
6Z6N|1|L5|G|1973
6Z6N|1|L5|U|1974
6Z6N|1|L5|G|1975
6Z6N|1|L5|G|1976
6Z6N|1|L5|C|1977
6Z6N|1|L5|C|1978
6Z6N|1|L5|A|1979
6Z6N|1|L5|U|1980
6Z6N|1|L5|G|1981
6Z6N|1|L5|G|1982
6Z6N|1|L5|A|1983
6Z6N|1|L5|A|1984
6Z6N|1|L5|G|1985
6Z6N|1|L5|U|1986
6Z6N|1|L5|C|1987
6Z6N|1|L5|G|1988
6Z6N|1|L5|G|1989
6Z6N|1|L5|A|1990
6Z6N|1|L5|A|1991
6Z6N|1|L5|U|1992
6Z6N|1|L5|C|1993
6Z6N|1|L5|C|1994
6Z6N|1|L5|G|1995
6Z6N|1|L5|C|1996
6Z6N|1|L5|U|1997
6Z6N|1|L5|A|1998
6Z6N|1|L5|A|1999
6Z6N|1|L5|G|2000
6Z6N|1|L5|G|2001
6Z6N|1|L5|A|2002
6Z6N|1|L5|G|2003
6Z6N|1|L5|U|2004
6Z6N|1|L5|G|2005
*
6Z6N|1|L5|C|2014
6Z6N|1|L5|U|2015
6Z6N|1|L5|C|2016
6Z6N|1|L5|A|2017
6Z6N|1|L5|C|2018
6Z6N|1|L5|C|2019

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2