IL_6Z6N_286
3D structure
- PDB id
- 6Z6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUAU*ACGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Z6N_286 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.3305
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Z6N|1|S2|G|108
6Z6N|1|S2|U|109
6Z6N|1|S2|U|110
6Z6N|1|S2|A|111
6Z6N|1|S2|U|112
*
6Z6N|1|S2|A|349
6Z6N|1|S2|C|350
6Z6N|1|S2|G|351
6Z6N|1|S2|U|352
6Z6N|1|S2|C|353
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: