IL_6ZJ3_003

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCC*G(OMG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_003 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1025

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6ZJ3|1|LA|C|24
6ZJ3|1|LA|C|25
6ZJ3|1|LA|C|26
*
6ZJ3|1|LC|G|540
6ZJ3|1|LC|OMG|541
6ZJ3|1|LC|G|542

Current chains

Chain LA

5.8S rRNA

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain LX

Ribosomal protein eL13

Chain Ll

Ribosomal protein uL24

Chain Ly

Ribosomal protein eL37