IL_6ZJ3_007

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_007 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1553

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ZJ3|1|LA|C|125
6ZJ3|1|LA|A|126
6ZJ3|1|LA|A|127
6ZJ3|1|LA|G|128
*
6ZJ3|1|LA|C|140
6ZJ3|1|LA|G|141
6ZJ3|1|LA|A|142
6ZJ3|1|LA|G|143

Current chains

Chain LA

5.8S rRNA

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lk

Ribosomal protein uL23