IL_6ZJ3_010
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_010 not in the Motif Atlas
- Homologous match to IL_8C3A_004
- Geometric discrepancy: 0.1874
- The information below is about IL_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
6ZJ3|1|LB|C|187
6ZJ3|1|LB|C|188
*
6ZJ3|1|LB|G|216
6ZJ3|1|LB|A|217
6ZJ3|1|LB|G|218
Current chains
- Chain LB
- LSU rRNA chain 1
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LX
- Ribosomal protein eL13
- Chain Lb
- Ribosomal protein eL15
- Chain Lp
- Ribosomal protein uL29
- Chain Ly
- Ribosomal protein eL37
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