IL_6ZJ3_012
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCGAACUU*A(OMU)CACUCAG
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|LB|C|209
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_012 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.0757
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LB|C|191
6ZJ3|1|LB|C|192
6ZJ3|1|LB|G|193
6ZJ3|1|LB|A|194
6ZJ3|1|LB|A|195
6ZJ3|1|LB|C|196
6ZJ3|1|LB|U|197
6ZJ3|1|LB|U|198
*
6ZJ3|1|LB|A|205
6ZJ3|1|LB|OMU|206
6ZJ3|1|LB|C|207
6ZJ3|1|LB|A|208
6ZJ3|1|LB|C|209
6ZJ3|1|LB|U|210
6ZJ3|1|LB|C|211
6ZJ3|1|LB|A|212
6ZJ3|1|LB|G|213
Current chains
- Chain LB
- LSU rRNA chain 1
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
- Chain Ly
- Ribosomal protein eL37
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