IL_6ZJ3_019

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCA*UGGCUGAACCGUG

Length

16 nucleotides

Bulged bases

6ZJ3|1|LC|C|375, 6ZJ3|1|LC|G|428, 6ZJ3|1|LC|U|434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LC|C|374
6ZJ3|1|LC|C|375
6ZJ3|1|LC|A|376
*
6ZJ3|1|LC|U|423
6ZJ3|1|LC|G|424
6ZJ3|1|LC|G|425
6ZJ3|1|LC|C|426
6ZJ3|1|LC|U|427
6ZJ3|1|LC|G|428
6ZJ3|1|LC|A|429
6ZJ3|1|LC|A|430
6ZJ3|1|LC|C|431
6ZJ3|1|LC|C|432
6ZJ3|1|LC|G|433
6ZJ3|1|LC|U|434
6ZJ3|1|LC|G|435

Current chains

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LA

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain Ll

Ribosomal protein uL24

Chain Ly

Ribosomal protein eL37